Greenleaflab/archr
WebJul 5, 2024 · Version. 1.0.2. Package repository. View on GitHub. Installation. Install the latest version of this package by entering the following in R: install.packages ("remotes") … WebJun 6, 2024 · GreenleafLab / ArchR Public. Notifications Fork 95; Star 282. Code; Issues 15; Pull requests 9; Discussions; Actions; Projects 0; Security; Insights; Getting …
Greenleaflab/archr
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WebNov 10, 2024 · GreenleafLab / ArchR Public. Notifications Fork 96; Star 284. Code; Issues 15; Pull requests 9; Discussions; Actions; Projects 0; Security; Insights New issue Have a question about this project? ... ArchR logging to : ArchRLogs/ArchR-addReproduciblePeakSet-a325acb7b94-Date-2024-11-10_Time-17-01-14.log If there is … WebApr 30, 2024 · Previously, I have used ArchR successfully to analyze fragments.tsv.gz files from cellranger-atac outputs. However, I tried to filter out specific cell barcodes in the …
WebOct 11, 2024 · ArchR-createArrows-6dde1096a29b-Date-2024-10-11_Time-13-52-12.log Hello, I am trying to run through the tutorial data set and have run into an error where … WebOptions include "Macs2" for using macs2 callpeak or "Tiles" for using a TileMatrix. #' @param reproducibility A string that indicates how peak reproducibility should be …
WebApr 10, 2024 · Teams. Q&A for work. Connect and share knowledge within a single location that is structured and easy to search. Learn more about Teams WebHello, I copy the ArchR output to another computer, while plotEmbedding function does not work due to the working directory sorted in ArchR object.
WebJun 14, 2024 · GreenleafLab / ArchR Public Notifications Fork 95 Star 282 Code Issues 15 Pull requests 9 Discussions Actions Projects Security Insights Peak call summary #821 Unanswered NoemieL asked this question in Questions / Documentation edited by rcorces NoemieL on Jun 14, 2024 Hello,
WebSep 28, 2024 · I am using my dataset for ArchR analyses. These are scATAC seq dataset. I am able to run through the initial steps of creation of arrow files but it seems to be stuck at "Creating ArrowFile From Temporary File 9.113 mins elapsed" for over two hours. birmingham al caterer selling charcuterieWebAug 13, 2024 · Hello, I am trying to export the peaks by cells accessibility matrix for external use, but when I use getMatrixFromProject the number of cells is much fewer than the number of cells in my ArchR project. I used the following code to call peaks and extract the matrix, and I included the log file for my getMatrixFromProject call. birmingham al christmas ornamentWeb5 hours ago · GreenleafLab / ArchR Public. Notifications Fork 96; Star 284. Code; Issues 18; Pull requests 9; Discussions; Actions; Projects 0; Security; Insights ... , reducedDims = "IterativeLSI" ) ArchR logging to : ArchRLogs/ArchR-addPeak2GeneLinks-28e376a2da62-Date-2024-04-14_Time-16-57-19.log If there is an issue, please report to github with … birmingham al christmas lights 2021WebJun 19, 2024 · Originally I thought there is something wrong with the dataset, but my PI's code works, and at the same time, the ArchR code works fine on the Tutorial dataset under current Conda environment. By the way, I used ArchR in Conda environment on HPC. The following is the sessionInfo(). Maybe, I should make a new ArchR only Conda … dan davis oklahoma city attorneydan davidson health oneWebGreenleafLab / ArchR Public. Notifications Fork 95; Star 282. Code; Issues 15; Pull requests 9; Discussions; Actions; Projects 0; Security; Insights Getting tile matrix ... I … birmingham al christmas lights 2022WebLove Archr. I went through the entire pipeline with my multiome paired scRNAseq and ATACseq data on 11 different samples. Now I have clusters and UMAPs generated via … d and a volvo witney